Micronuclear Sequences Associated with Assembly Graphs

TL;DR

This paper explores how to determine micronuclear sequences from assembly graphs with specific focus on Hamiltonian paths and smoothings, analyzing orientations and their effects on sequence formation.

Contribution

It introduces a method to identify micronuclear sequences based on assembly graph orientations and smoothings, focusing on graphs with two 4-valent vertices.

Findings

Analysis of orientations affects sequence determination

Different smoothings influence micronuclear sequences

Focus on specific assembly graph configurations

Abstract

This paper investigates given an assembly graph, find the possible micronuclear sequences in terms of MDSs and IESs; which represent Hamiltonian polygonal paths. We will consider the orientations of the assembly graph and Hamiltonian polygonal path. To obtain a micronuclear sequence of this path, we will compare orientation of the Hamiltonian polygonal path with respect to the orientation of the assembly graph. We concentrate on two assembly graphs with two 4-valent vertices. These Hamiltonian polygonal paths influence the type of smoothings performed. There are two types of smoothings parallel and non-parallel smoothing. We consider a micronuclear sequence after one smoothing of a vertex.