Inducing the LCP-Array
Johannes Fischer

TL;DR
This paper presents a modification to a linear-time suffix array construction algorithm that also computes the LCP-array efficiently, outperforming recent methods in practical tests.
Contribution
It introduces a novel modification to an existing suffix array algorithm to simultaneously compute the LCP-array efficiently.
Findings
Outperforms recent LCP-array construction algorithms in practical tests
Maintains linear-time complexity for combined suffix array and LCP-array construction
Provides an efficient method suitable for large-scale string processing
Abstract
We show how to modify the linear-time construction algorithm for suffix arrays based on induced sorting (Nong et al., DCC'09) such that it computes the array of longest common prefixes (LCP-array) as well. Practical tests show that this outperforms recent LCP-array construction algorithms (Gog and Ohlebusch, ALENEX'11).
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Taxonomy
TopicsAlgorithms and Data Compression · Genomics and Phylogenetic Studies · DNA and Biological Computing
