Analysis and visualisation of RDF resources in Ondex
Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew Pocock,, Christopher Rawlings
TL;DR
This paper discusses Ondex, a platform for integrating and visualizing RDF-based data in Systems Biology, leveraging its compatibility with the Semantic Web for enhanced data analysis.
Contribution
It introduces Ondex's RDF-compatible data model, enabling effective integration and visualization of semantic web resources in biological research.
Findings
Ondex supports RDF data integration.
Enhanced visualization of RDF resources in Systems Biology.
Compatibility with Semantic Web standards.
Abstract
Ondex is a data integration and visualization platform developed to support Systems Biology Research. At its core is a data model based on two main principles: first, all information can be represented as a graph and, second, all elements of the graph can be annotated with ontologies. This data model is conformant to the Semantic Web framework, in particular to RDF, and therefore Ondex is ideally positioned as a platform that can exploit the semantic web.
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Taxonomy
TopicsBiomedical Text Mining and Ontologies · Bioinformatics and Genomic Networks · Semantic Web and Ontologies