How to build a DNA search engine like Google?
Wang Liang, Fang Bo
TL;DR
This paper presents a novel approach to constructing a large-scale DNA search engine inspired by web search technology, enabling rapid, high-volume DNA sequence searches without local alignment.
Contribution
It introduces a new system design for DNA search engines that leverages web search techniques, allowing efficient, scalable, and fast DNA sequence retrieval.
Findings
Supports billions of DNA sequences with millisecond response times
Eliminates the need for local alignment in searches
Demonstrates scalability and efficiency of the proposed system
Abstract
This paper proposed a new method to build the large scale DNA sequences search system based on web search engine technology. We give a very brief introduction for the methods used in search engine first. Then how to build a DNA search system like Google is illustrated in detail. Since there is no local alignment process, this system is able to provide the ms level search services for billions of DNA sequences in a typical server.
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Taxonomy
TopicsGenomics and Phylogenetic Studies · Fractal and DNA sequence analysis · RNA and protein synthesis mechanisms