A Multivariate Variance Components Model for Analysis of Covariance in Designed Experiments
James G. Booth, Walter T. Federer, Martin T. Wells, Russell D., Wolfinger

TL;DR
This paper introduces a multivariate variance components model for analyzing covariance in designed experiments, addressing issues with traditional methods and clarifying misconceptions in the statistical literature.
Contribution
It proposes a coherent multivariate model for joint response and covariates analysis, highlighting correct model specification and adjustments in orthogonal designs.
Findings
Corrects misconceptions about variance components models
Shows that proper adjustments are possible in orthogonal designs
Identifies biases in widely used models
Abstract
Traditional methods for covariate adjustment of treatment means in designed experiments are inherently conditional on the observed covariate values. In order to develop a coherent general methodology for analysis of covariance, we propose a multivariate variance components model for the joint distribution of the response and covariates. It is shown that, if the design is orthogonal with respect to (random) blocking factors, then appropriate adjustments to treatment means can be made using the univariate variance components model obtained by conditioning on the observed covariate values. However, it is revealed that some widely used models are incorrectly specified, leading to biased estimates and incorrect standard errors. The approach clarifies some issues that have been the source of ongoing confusion in the statistics literature.
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