On Critical Relative Distance of DNA Codes for Additive Stem Similarity
A. D'yachkov, A. Voronina, A. Macula, T. Renz, V. Rykov
TL;DR
This paper surveys bounds on the rate of DNA codes based on additive stem similarity, a thermodynamically motivated measure reflecting hybridization potential, aiding analysis of DNA secondary structures.
Contribution
It provides a comprehensive survey of bounds on DNA code rates using additive stem similarity, connecting thermodynamic measures with code performance.
Findings
Bounds on DNA code rates with additive stem similarity
Method for analyzing thermodynamic weights in DNA structures
Comparison of known DNA code samples
Abstract
We consider DNA codes based on the nearest-neighbor (stem) similarity model which adequately reflects the "hybridization potential" of two DNA sequences. Our aim is to present a survey of bounds on the rate of DNA codes with respect to a thermodynamically motivated similarity measure called an additive stem similarity. These results yield a method to analyze and compare known samples of the nearest neighbor "thermodynamic weights" associated to stacked pairs that occurred in DNA secondary structures.
Peer Reviews
No public reviews on file for this paper yet. If you reviewed it on a platform where reviews are public (OpenReview, ICLR, NeurIPS, ICML), you can paste yours below so the community can read it here.
Videos
No videos yet. Explain this paper in a talk, walkthrough, or lecture? Add one.