Characterizing phylogenetically decisive taxon coverage

TL;DR

This paper investigates the minimal taxon coverage needed in overlapping subsets to guarantee unique reconstruction of a comprehensive evolutionary supertree, providing combinatorial and probabilistic insights.

Contribution

It offers a combinatorial characterization and probabilistic analysis of taxon coverage requirements for unique supertree reconstruction.

Findings

A combinatorial condition for unique supertree reconstruction

A probabilistic analysis of coverage sufficiency

Insights into minimal taxon coverage for phylogenetic trees

Abstract

Increasingly, biologists are constructing evolutionary trees on large numbers of overlapping sets of taxa, and then combining them into a `supertree' that classifies all the taxa. In this paper, we ask how much coverage of the total set of taxa is required by these subsets in order to ensure we have enough information to reconstruct the supertree uniquely. We describe two results - a combinatorial characterization of the covering subsets to ensure that at most one supertree can be constructed from the smaller trees (whatever trees these may be) and a more liberal analysis that asks only that the supertree is highly likely to be uniquely specified by the tree structure on the covering subsets.