MicroRNA Systems Biology

TL;DR

This review explores the role of microRNAs in cellular networks, highlighting their regulatory principles and recent advances in understanding their systemic functions in gene regulation, disease, and biological processes.

Contribution

It provides a comprehensive overview of miRNA involvement in cellular networks and introduces new insights into their regulatory principles at a systems level.

Findings

miRNAs regulate genes with high regulation complexity

miRNAs target positive regulatory motifs and network scaffolds

miRNAs selectively regulate specific network structural features

Abstract

Recently, microRNAs (miRNAs) have emerged as central posttranscriptional regulators of gene expression. miRNAs regulate many key biological processes, including cell growth, death, development and differentiation. This discovery is challenging the central dogma of molecular biology. Genes are working together by forming cellular networks. It has become an emerging concept that miRNAs could intertwine with cellular networks to exert their function. Thus, it is essential to understand how miRNAs take part in cellular processes at a systems-level. In this review, I will first introduce basic knowledge of miRNAs and their relations to heart disaeses and cancer, highlight recently dicovered functions such as filtering out gene expression noise by miRNAs. I will aslo introduce basic concepts of cellular networks and interpret their biological meaning in such a way that the network concepts are digested in a biological context and are understandable for biologists. Finally, I will summarize the most recent progress in understanding of miRNA biology at a systems-level: the principles of miRNA regulation of the major cellular networks including signaling, metabolic, protein interaction and gene regulatory networks. A common miRNA regulatory principle is emerging: miRNAs preferentially regulated the genes that have high regulation complexity. In addition, miRNAs preferentially regulate positive regulatory motifs, highly connected scaffolds and the most network downstream components of cellular signaling networks, while miRNAs selectively regulate the genes which have specific network structural features on metabolic networks.